recipe biotradis

A set of tools to analyse the output from TraDIS analyses

Homepage:

https://github.com/sanger-pathogens/Bio-Tradis

License:

GPL3 / GPL-3.0-only

Recipe:

/biotradis/meta.yaml

package biotradis

Versions:

1.4.5-5,  1.4.5-4,  1.4.5-3,  1.4.5-2,  1.4.5-1,  1.4.5-0,  1.4.1-0,  1.4.1.dev-4,  1.4.1.dev-3, 

1.4.5-5,  1.4.5-4,  1.4.5-3,  1.4.5-2,  1.4.5-1,  1.4.5-0,  1.4.1-0,  1.4.1.dev-4,  1.4.1.dev-3,  1.4.1.dev-2,  1.4.1.dev-1,  1.4.1.dev-0

Depends:

• bioconductor-edger

• bwa

• htslib

• perl

• perl-app-cpanminus

• perl-bioperl >=1.7.2

• perl-exception-class

• perl-local-lib

• perl-moose

• perl-parallel-forkmanager

• perl-pathtools

• perl-scalar-util-numeric

• perl-text-csv

• r-base

• r-getopt

• r-mass

• samtools

• smalt

Required By:

• albatradis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install biotradis

and update with:

conda update biotradis

or use the docker container:

docker pull quay.io/biocontainers/biotradis:<tag>

(see biotradis/tags for valid values for <tag>)

Download stats

Link to this page

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