recipe biscot

Bionano SCaffolding Correction Tool

Homepage:

https://github.com/institut-de-genomique/biscot

License:

LGPL-2.1

Recipe:

/biscot/meta.yaml

package biscot

(downloads) docker_biscot

versions:

2.3.3-0

depends argparse:

depends biopython:

depends coloredlogs:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biscot

and update with::

   mamba update biscot

To create a new environment, run:

mamba create --name myenvname biscot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biscot:<tag>

(see `biscot/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biscot/README.html)