recipe blasr

BLASR - The PacBio long read aligner

Homepage

https://github.com/PacificBiosciences/blasr

License

BSD-3-Clause-Clear

Recipe

/blasr/meta.yaml

package blasr

Versions

5.3.3-0, 5.3.2-5, 5.3.2-4, 5.3.2-3, 5.3.2-2, 5.3.2-1, 5.3.2-0, 5.3.1-0, 5.2p1-0

Depends

• blasr_libcpp 5.3.3.*

• hdf5 >=1.10.4,<1.10.5.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• pbbam 0.23.0.*

• zlib >=1.2.11,<1.3.0a0

Required By

• pb-assembly

• minorseq

• pbalign

• wgs-assembler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install blasr

and update with:

conda update blasr

or use the docker container:

docker pull quay.io/biocontainers/blasr:<tag>

(see blasr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blasr/README.html)