recipe blast

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

Homepage

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs

License

Public Domain

Recipe

/blast/meta.yaml

Links

biotools: blast, doi: 10.1016/S0022-2836(05)80360-2

package blast

Versions

2.9.0-4, 2.9.0-3, 2.9.0-2, 2.9.0-1, 2.9.0-0, 2.7.1-6, 2.7.1-5, 2.7.1-3, 2.7.1-2, 2.7.1-1, 2.6.0-2, 2.6.0-1, 2.6.0-0, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.2.31-3, 2.2.31-2, 2.2.31-1, 2.2.21-0

Depends

• bzip2 >=1.0.8,<2.0a0

• curl >=7.64.1,<8.0a0

• entrez-direct

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• pcre >=8.41,<9.0a0

• perl >=5.26.2,<5.26.3.0a0

• perl-archive-tar

• perl-json

• perl-list-moreutils

• zlib >=1.2.11,<1.3.0a0

Required By

• maker

• seqsero2

• virmet

• bactopia

• busco

• ctat-metagenomics

• ectyper

• haplotype-lso

• rsat-core

• berokka

• perl-bio-mlst-check

• hs-blastn

• riboseed

• dfast

• nanovar

• spotyping3

• super-focus

• refinem

• hicap

• kaptive

• find_differential_primers

• crb-blast

• antismash

• chewbbaca

• kleborate

• mlst

• srax

• knock-knock

• vcfkit

• edta

• platon

• grid

• reparation_blast

• abricate

• abritamr

• staramr

• chromatiblock

• star-fusion

• prokka

• metawrap

• mob_suite

• rnaquast

• genenotebook

• kraken2

• oligotyping

• shiver

• kobas

• virsorter

• amap

• ismapper

• mcl

• cmfinder

• bmtagger

• wade

• perl-bio-automatedannotation

• batvi

• trinotate

• fgmp

• metaxa

• emmtyper

• thapbi-pict

• r-rblast

• crypto_typer

• sistr_cmd

• presto

• semeta

• socru

• genblastg

• genblasta

• whatsgnu

• frogs

• rgi

• plant_tribes_kaks_analysis

• funannotate

• metaphlan2

• plasmidfinder

• plant_tribes_gene_family_classifier

• rkp

• tetyper

• mitos

• t-coffee

• spotyping

• das_tool

• magpurify

• metawatt

• smeg

• quast

• magicblast

• ncbi-amrfinderplus

• gmcloser

• pirate

• fgap

• sprai

• rop

• roary

• unicycler

• tesorter

• clsify

• anvio

• fusion-filter

• isescan

• pyani

• minvar

• rnalien

• asqcan

• braker2

• neptune

• kmasker

• rucs

• transrate

• fcp

• orthofinder

• orthomcl

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install blast

and update with:

conda update blast

or use the docker container:

docker pull quay.io/biocontainers/blast:<tag>

(see blast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blast/README.html)