recipe blast

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

Homepage

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs

License

Public Domain

Recipe

/blast/meta.yaml

Links

biotools: blast, doi: 10.1016/S0022-2836(05)80360-2

package blast

Versions

2.7.1-6, 2.7.1-5, 2.7.1-3, 2.7.1-2, 2.7.1-1, 2.6.0-2, 2.6.0-1, 2.6.0-0, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.2.31-2, 2.2.31-1, 2.2.21-0

Depends

• boost >=1.67.0,<1.67.1.0a0

• bzip2 >=1.0.6,<2.0a0

• gnutls >=3.5.19,<3.6.0a0

• libgcc-ng >=4.9

• libstdcxx-ng >=4.9

• nettle >=3.3,<3.4.0a0

• pcre >=8.41,<9.0a0

• perl

• perl-archive-tar

• perl-list-moreutils

• zlib >=1.2.11,<1.3.0a0

Required By

• frogs

• minvar

• braker2

• plant_tribes_gene_family_classifier

• spotyping3

• bmtagger

• roary

• shiver

• orthofinder

• chewbbaca

• find_differential_primers

• rgi

• sprai

• antismash

• maker

• das_tool

• r-rblast

• ctat-metagenomics

• metawrap

• fcp

• berokka

• genblastg

• abricate

• busco

• perl-bio-automatedannotation

• reparation_blast

• cmfinder

• asqcan

• anvio

• perl-bio-mlst-check

• hs-blastn

• mlst

• super-focus

• neptune

• ectyper

• presto

• star-fusion

• t-coffee

• prokka

• kaptive

• riboseed

• rnaquast

• genenotebook

• grid

• crb-blast

• kraken2

• metawatt

• metaxa

• oligotyping

• refinem

• socru

• hicap

• kleborate

• mcl

• staramr

• plant_tribes_kaks_analysis

• trinotate

• fgap

• metaphlan2

• spotyping

• genblasta

• fusion-filter

• semeta

• ismapper

• mob_suite

• orthomcl

• kobas

• sistr_cmd

• unicycler

• gmcloser

• fgmp

• amap

• pyani

• virmet

• quast

• batvi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install blast

and update with:

conda update blast

or use the docker container:

docker pull quay.io/biocontainers/blast:<tag>

(see blast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blast/README.html)