recipe blast

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

Homepage:

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs

License:

Public Domain

Recipe:

/blast/meta.yaml

Links:

biotools: blast, doi: 10.1016/S0022-2836(05)80360-2, usegalaxy-eu: ncbi_blastx_wrapper

package blast

versions:

2.15.0-1,  2.15.0-0,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.13.0-1,  2.13.0-0,  2.12.0-4, 

2.15.0-1,  2.15.0-0,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.13.0-1,  2.13.0-0,  2.12.0-4,  2.12.0-3,  2.12.0-2,  2.12.0-1,  2.12.0-0,  2.11.0-1,  2.11.0-0,  2.10.1-3,  2.10.1-2,  2.10.1-1,  2.10.1-0,  2.9.0-7,  2.9.0-6,  2.9.0-5,  2.9.0-4,  2.9.0-3,  2.9.0-2,  2.9.0-1,  2.9.0-0,  2.7.1-6,  2.7.1-5,  2.7.1-3,  2.7.1-2,  2.7.1-1,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.2.31-5,  2.2.31-4,  2.2.31-3,  2.2.31-2,  2.2.31-1,  2.2.21-0

depends bzip2:

>=1.0.8,<2.0a0

depends curl:

depends entrez-direct:

depends libgcc-ng:

>=12

depends libsqlite:

>=3.44.0,<4.0a0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends ncbi-vdb:

>=3.0.8,<4.0a0

depends pcre:

>=8.45,<9.0a0

depends perl:

depends perl-archive-tar:

depends perl-json:

depends perl-list-moreutils:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install blast

and update with::

   mamba update blast

To create a new environment, run:

mamba create --name myenvname blast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/blast:<tag>

(see `blast/tags`_ for valid values for ``<tag>``)

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