recipe blast

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

Homepage

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs

License

Public Domain

Recipe

/blast/meta.yaml

Links

biotools: blast, doi: 10.1016/S0022-2836(05)80360-2

package blast

Versions

2.9.0-3, 2.9.0-2, 2.9.0-1, 2.9.0-0, 2.7.1-6, 2.7.1-5, 2.7.1-3, 2.7.1-2, 2.7.1-1, 2.6.0-2, 2.6.0-1, 2.6.0-0, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.2.31-2, 2.2.31-1, 2.2.21-0

Depends

• bzip2 >=1.0.6,<2.0a0

• curl >=7.64.1,<8.0a0

• entrez-direct

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• pcre >=8.41,<9.0a0

• perl >=5.26.2,<5.26.3.0a0

• perl-archive-tar

• perl-json

• perl-list-moreutils

• zlib >=1.2.11,<1.3.0a0

Required By

• cmfinder

• abricate

• mcl

• batvi

• bmtagger

• anvio

• refinem

• fgap

• rnaquast

• ncbi-amr

• das_tool

• metawrap

• plasmidfinder

• fusion-filter

• sprai

• platon

• trinotate

• riboseed

• amap

• t-coffee

• prokka

• rnalien

• star-fusion

• orthomcl

• presto

• quast

• braker2

• ncbi-amrfinderplus

• ctat-metagenomics

• genblastg

• fcp

• shiver

• kaptive

• asqcan

• perl-bio-automatedannotation

• perl-bio-mlst-check

• unicycler

• ismapper

• genenotebook

• antismash

• kraken2

• metawatt

• grid

• ectyper

• gmcloser

• rgi

• rop

• maker

• pyani

• busco

• metaxa

• roary

• fgmp

• metaphlan2

• orthofinder

• find_differential_primers

• thapbi-pict

• virsorter

• magicblast

• hicap

• chewbbaca

• sistr_cmd

• frogs

• neptune

• magpurify

• mlst

• crypto_typer

• berokka

• crb-blast

• r-rblast

• plant_tribes_gene_family_classifier

• spotyping

• minvar

• oligotyping

• genblasta

• seqsero2

• kleborate

• virmet

• spotyping3

• super-focus

• kobas

• staramr

• emmtyper

• dfast

• bactopia

• mob_suite

• plant_tribes_kaks_analysis

• socru

• reparation_blast

• semeta

• smeg

• hs-blastn

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install blast

and update with:

conda update blast

or use the docker container:

docker pull quay.io/biocontainers/blast:<tag>

(see blast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blast/README.html)