recipe blast

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

Homepage:

https://blast.ncbi.nlm.nih.gov/doc/blast-help/

License:

NCBI-PD

Recipe:

/blast/meta.yaml

Links:

biotools: blast, doi: 10.1016/S0022-2836(05)80360-2, usegalaxy-eu: ncbi_blastx_wrapper

BLAST Command Line Applications.

The NCBI Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

For more information, visit https://blast.ncbi.nlm.nih.gov

package blast

versions:

2.16.0-2,  2.16.0-1,  2.16.0-0,  2.15.0-1,  2.15.0-0,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0, 

2.16.0-2,  2.16.0-1,  2.16.0-0,  2.15.0-1,  2.15.0-0,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.13.0-1,  2.13.0-0,  2.12.0-4,  2.12.0-3,  2.12.0-2,  2.12.0-1,  2.12.0-0,  2.11.0-1,  2.11.0-0,  2.10.1-3,  2.10.1-2,  2.10.1-1,  2.10.1-0,  2.9.0-7,  2.9.0-6,  2.9.0-5,  2.9.0-4,  2.9.0-3,  2.9.0-2,  2.9.0-1,  2.9.0-0,  2.7.1-6,  2.7.1-5,  2.7.1-3,  2.7.1-2,  2.7.1-1,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.2.31-5,  2.2.31-4,  2.2.31-3,  2.2.31-2,  2.2.31-1,  2.2.21-0

depends bzip2:

>=1.0.8,<2.0a0

depends curl:

depends entrez-direct:

>=22.4,<23.0a0

depends libgcc-ng:

>=12

depends libsqlite:

>=3.46.0,<4.0a0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends ncbi-vdb:

>=3.1.1,<4.0a0

depends perl:

depends perl-archive-tar:

depends perl-json:

depends perl-list-moreutils:

depends rpsbproc:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install blast

and update with::

   mamba update blast

To create a new environment, run:

mamba create --name myenvname blast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/blast:<tag>

(see `blast/tags`_ for valid values for ``<tag>``)

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