recipe blastmining

blastMining: Mining NCBI BLAST outputs

Homepage:

https://github.com/NuruddinKhoiry/blastMining

Documentation:

https://github.com/NuruddinKhoiry/blastMining/blob/master/README.md

License:

GPL3 / GNU GENERAL PUBLIC V3

Recipe:

/blastmining/meta.yaml

Links:

biotools: blastMining, doi: 10.5281/zenodo.7431488

package blastmining

(downloads) docker_blastmining

versions:

1.2.0-0,  1.1.0-0,  1.0.0-0

depends blast:

>=2.12.0

depends csvtk:

depends fastnumbers:

depends krona:

depends numpy:

depends pandas:

depends parallel:

depends python:

>=3.6

depends taxonkit:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install blastmining

and update with::

   mamba update blastmining

To create a new environment, run:

mamba create --name myenvname blastmining

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/blastmining:<tag>

(see `blastmining/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blastmining/README.html)