recipe bleties

BleTIES: Basic Long-read Enabled Toolkit for Interspersed DNA Elimination Studies

Homepage:

https://github.com/Swart-lab/bleties

License:

MIT

Recipe:

/bleties/meta.yaml

Links:

doi: 10.5281/zenodo.4723565

package bleties

versions:

0.1.11-1,  0.1.11-0,  0.1.9-0

depends biopython:

1.76.*

depends htslib:

1.9.*

depends matplotlib-base:

depends muscle:

3.8.1551.*

depends ncrf:

1.01.02.*

depends pandas:

depends pip:

depends pysam:

0.15.4.*

depends python:

3.7.6.*

depends samtools:

1.9.*

depends scipy:

1.5.0.*

depends spoa:

4.0.3.*

depends xz:

5.2.5.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bleties

and update with::

   mamba update bleties

To create a new environment, run:

mamba create --name myenvname bleties

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bleties:<tag>

(see `bleties/tags`_ for valid values for ``<tag>``)

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