recipe blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Homepage:

https://blobtools.readme.io/docs/what-is-blobtools

License:

GPL / GPLv3

Recipe:

/blobtools/meta.yaml

Links:

doi: 10.12688/f1000research.12232.1

package blobtools

(downloads) docker_blobtools

versions:

1.1.1-1,  1.1.1-0,  1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.1-0

depends docopt:

depends matplotlib:

depends pysam:

depends python:

>=3

depends pyyaml:

>=4.2b1

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install blobtools

and update with::

   mamba update blobtools

To create a new environment, run:

mamba create --name myenvname blobtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/blobtools:<tag>

(see `blobtools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blobtools/README.html)