recipe bloomfiltertrie

An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.

Homepage:

https://github.com/GuillaumeHolley/BloomFilterTrie

License:

MIT / MIT

Recipe:

/bloomfiltertrie/meta.yaml

package bloomfiltertrie

(downloads) docker_bloomfiltertrie

versions:

0.8.7-5,  0.8.7-4,  0.8.7-3,  0.8.7-2,  0.8.7-1,  0.8.7-0,  0.8.1-0

depends jemalloc:

depends judy:

depends libgcc-ng:

>=12

depends libjemalloc:

>=5.3.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bloomfiltertrie

and update with::

   mamba update bloomfiltertrie

To create a new environment, run:

mamba create --name myenvname bloomfiltertrie

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bloomfiltertrie:<tag>

(see `bloomfiltertrie/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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