recipe bohra

Pipeline for analysing Illumina data for microbiological public health.

Homepage:

https://github.com/kristyhoran/bohra

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/bohra/meta.yaml

package bohra

Versions:

2.2.1-0,  2.2.0-0,  1.2.20-0,  1.2.19-1,  1.2.19-0,  1.2.18-0,  1.2.16-0,  1.2.15-0,  1.2.14-0, 

2.2.1-0,  2.2.0-0,  1.2.20-0,  1.2.19-1,  1.2.19-0,  1.2.18-0,  1.2.16-0,  1.2.15-0,  1.2.14-0,  1.2.12-0,  1.2.11-0,  1.2.10-1,  1.2.10-0,  1.2.9-0,  1.2.6-0,  1.2.4-0,  1.2.3-0,  1.2.1-0,  1.1.8-0,  1.1.7-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.27-0,  1.0.26-0,  1.0.25-0,  1.0.24-0,  1.0.23-0,  1.0.22-0,  1.0.20-1,  1.0.20-0,  1.0.19-0

Depends:

• any2fasta

• biopython 1.81.*

• csvtk

• jinja2

• nextflow 22.10.6.*

• numpy 1.23.1.*

• packaging

• pandas 1.0.5.*

• perl-list-moreutils

• perl-svg

• perl-text-csv

• psutil

• pytest

• pytest-runner

• python >=3.8

• sh

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bohra

and update with:

conda update bohra

or use the docker container:

docker pull quay.io/biocontainers/bohra:<tag>

(see bohra/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bohra/README.html)