recipe bowtie

An ultrafast memory-efficient short read aligner

Homepage:

https://github.com/BenLangmead/bowtie

License:

Artistic-2.0-only

Recipe:

/bowtie/meta.yaml

Links:

biotools: bowtie, doi: 10.1186/gb-2009-10-3-r25

package bowtie

Versions:

1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.3-2, 

1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.3-2,  1.2.3-1,  1.2.3-0,  1.2.2-1,  1.2.2-0,  1.2.1.1-0,  1.2.0-0,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.0-1,  1.0.0-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• perl

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• tbb >=2021.5.0

• zlib >=1.2.12,<1.3.0a0

Required By:

• mirdeep2

• seq2hla

• plastid

• imfusion

• dunovo

• trnanalysis

• repenrich

• fusioncatcher

• capc-map

• cap-mirseq

• hmmcopy

• ngseqbasic

• circexplorer2

• srnaminer

• mirge-build

• emirge

• splicemap

• hicup

• mirdeep-p2

• mockinbird

• trinity

• methylpy

• virema

• shortstack

• mir-prefer

• mirge3

• umap

• efishent

• fastq-screen

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bowtie

and update with:

conda update bowtie

or use the docker container:

docker pull quay.io/biocontainers/bowtie:<tag>

(see bowtie/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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