recipe brass

BRASS analyses one or more related BAM files of paired-end sequencing to determine potential rearrangement breakpoints.

Homepage:

https://github.com/cancerit/BRASS

License:

AGPL-3-0

Recipe:

/brass/meta.yaml

package brass

Versions:

5.1.6-7,  5.1.6-2

Depends:

• bedtools

• blat

• cansam

• exonerate

• libgcc

• perl-bio-db-hts

• perl-bio-featureio

• perl-bioperl-core ==1.6.924

• perl-capture-tiny

• perl-file-sharedir

• perl-file-sharedir-install

• perl-graph-readwrite

• perl-grass

• perl-math-combinatorics

• perl-number-format

• perl-pcap

• perl-statistics-basic

• perl-text-diff

• velvet

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install brass

and update with:

conda update brass

or use the docker container:

docker pull quay.io/biocontainers/brass:<tag>

(see brass/tags for valid values for <tag>)

Download stats

Link to this page

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