recipe brass

BRASS analyses one or more related BAM files of paired-end sequencing to determine potential rearrangement breakpoints.

Homepage

https://github.com/cancerit/BRASS

License

AGPL-3-0

Recipe

/brass/meta.yaml

package brass

(downloads) docker_brass

Versions

5.1.6-7, 5.1.6-2

Depends bedtools

Depends blat

Depends cansam

Depends exonerate

Depends libgcc

Depends perl-bio-db-hts

Depends perl-bio-featureio

Depends perl-bioperl-core

==1.6.924

Depends perl-capture-tiny

Depends perl-file-sharedir

Depends perl-file-sharedir-install

Depends perl-graph-readwrite

Depends perl-grass

Depends perl-math-combinatorics

Depends perl-number-format

Depends perl-pcap

Depends perl-statistics-basic

Depends perl-text-diff

Depends velvet

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install brass

and update with:

conda update brass

or use the docker container:

docker pull quay.io/biocontainers/brass:<tag>

(see brass/tags for valid values for <tag>)