recipe brooklyn_plot

Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data

Homepage:

https://github.com/arunhpatil/brooklyn/

Documentation:

https://brooklyn-plot.readthedocs.io/

License:

MIT / MIT

Recipe:

/brooklyn_plot/meta.yaml

Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data

package brooklyn_plot

versions:

0.0.4-0,  0.0.3-0

depends numpy:

<1.24

depends pandas:

depends python:

>=3.7

depends scanpy:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install brooklyn_plot

and update with::

   mamba update brooklyn_plot

To create a new environment, run:

mamba create --name myenvname brooklyn_plot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/brooklyn_plot:<tag>

(see `brooklyn_plot/tags`_ for valid values for ``<tag>``)

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Link to this page

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