recipe bs-seeker2

BS Seeker 2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treated short reads.

Homepage:

http://pellegrini.mcdb.ucla.edu/BS_Seeker2/

License:

MIT

Recipe:

/bs-seeker2/meta.yaml

package bs-seeker2

(downloads) docker_bs-seeker2

versions:

2.1.7-1,  2.1.7-0,  2.1.0-1,  2.1.0-0

depends bowtie2:

depends pysam:

depends python:

<3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bs-seeker2

and update with::

   mamba update bs-seeker2

To create a new environment, run:

mamba create --name myenvname bs-seeker2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bs-seeker2:<tag>

(see `bs-seeker2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bs-seeker2/README.html)