recipe bsmap

BSMAP is a short reads mapping software for bisulfite sequencing reads.

Homepage:

https://code.google.com/archive/p/bsmap/

License:

GPL / GNU GPL v3

Recipe:

/bsmap/meta.yaml

Links:

biotools: bsmap, doi: 10.1186/1471-2105-10-232

package bsmap

(downloads) docker_bsmap

versions:

2.90-5,  2.90-4,  2.90-3,  2.90-2,  2.90-1,  2.90-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends python:

2.7.*

depends samtools:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bsmap

and update with::

   mamba update bsmap

To create a new environment, run:

mamba create --name myenvname bsmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bsmap:<tag>

(see `bsmap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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