recipe btrim

This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Homepage:

https://github.com/Malfoy/BTRIM

License:

AGPL-3.0

Recipe:

/btrim/meta.yaml

package btrim

Versions:

1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.0-0

Depends:

• _openmp_mutex >=4.5

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• bwise

• bcool

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install btrim

and update with:

conda update btrim

or use the docker container:

docker pull quay.io/biocontainers/btrim:<tag>

(see btrim/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/btrim/README.html)