recipe btrim

This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Homepage

https://github.com/Malfoy/BTRIM

License

AGPL-3.0

Recipe

/btrim/meta.yaml

package btrim

(downloads) docker_btrim

Versions

1.0.1-21.0.1-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install btrim

and update with:

conda update btrim

or use the docker container:

docker pull quay.io/biocontainers/btrim:<tag>

(see btrim/tags for valid values for <tag>)