recipe bttoxin_digger

A toxin minging tool for Bacillus thuringiensis

Homepage:

https://github.com/liaochenlanruo/BtToxin_Digger/blob/master/README.md

Developer docs:

https://github.com/liaochenlanruo/BtToxin_Digger/tree/master

License:

GPL / GPLv3

Recipe:

/bttoxin_digger/meta.yaml

Links:

biotools: bttoxin_digger

package bttoxin_digger

versions:

1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-1,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-0, 

1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-1,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0

depends abyss:

depends blast:

depends bwa:

depends canu:

depends fastp:

depends hmmer:

depends libsvm:

depends perl-bioperl:

>=1.7.2

depends perl-file-tee:

depends perl-getopt-long:

depends perl-list-util:

depends perl-pod-usage:

depends racon:

depends spades:

>=3.6.2,<=3.13.0

depends unicycler:

0.4.7.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bttoxin_digger

and update with::

   mamba update bttoxin_digger

To create a new environment, run:

mamba create --name myenvname bttoxin_digger

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bttoxin_digger:<tag>

(see `bttoxin_digger/tags`_ for valid values for ``<tag>``)

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