recipe bttoxin_scanner

A toxin exploration tool for Bacillus thuringiensis

Homepage:

https://github.com/liaochenlanruo/BtToxin_scanner/blob/master/README.md

Developer docs:

https://github.com/liaochenlanruo/BtToxin_scanner/tree/master

License:

GPL / GPLv3

Recipe:

/bttoxin_scanner/meta.yaml

Links:

biotools: BtToxin_scanner

package bttoxin_scanner

(downloads) docker_bttoxin_scanner

versions:

2.0.1-0

depends blast:

depends hmmer:

depends libsvm:

depends perl-file-tee:

depends perl-getopt-long:

depends perl-pod-usage:

depends pgcgap:

>=1.0.13

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bttoxin_scanner

and update with::

   mamba update bttoxin_scanner

To create a new environment, run:

mamba create --name myenvname bttoxin_scanner

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bttoxin_scanner:<tag>

(see `bttoxin_scanner/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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