recipe bubblegun

BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.

Homepage:

https://github.com/fawaz-dabbaghieh/bubble_gun

Documentation:

https://github.com/fawaz-dabbaghieh/bubble_gun/blob/v1.1.9/README.md

Developer docs:

https://github.com/fawaz-dabbaghieh

License:

MIT / MIT

Recipe:

/bubblegun/meta.yaml

package bubblegun

(downloads) docker_bubblegun

versions:

1.1.9-0

depends python:

>=3.6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bubblegun

and update with::

   mamba update bubblegun

To create a new environment, run:

mamba create --name myenvname bubblegun

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bubblegun:<tag>

(see `bubblegun/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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