recipe busco_phylogenomics

Utility script to construct species phylogenies using BUSCO proteins.

Homepage:

https://github.com/jamiemcg/BUSCO_phylogenomics

License:

MIT / MIT

Recipe:

/busco_phylogenomics/meta.yaml

package busco_phylogenomics

versions:

20240919-0

depends biopython:

depends fasttree:

depends iqtree:

depends muscle:

>=5.1

depends python:

>=3.8

depends trimal:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install busco_phylogenomics

and update with::

   mamba update busco_phylogenomics

To create a new environment, run:

mamba create --name myenvname busco_phylogenomics

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/busco_phylogenomics:<tag>

(see `busco_phylogenomics/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/busco_phylogenomics/README.html)