recipe bwa

The BWA read mapper.

Homepage:https://github.com/lh3/bwa License:GPL3 Recipe:/bwa/meta.yaml Links:biotools: bwa

package bwa

Versions:

0.7.17-5, 0.7.17-4, 0.7.17-3, 0.7.17-2, 0.7.17-1, 0.7.17-0, 0.7.16-0, 0.7.15-1, 0.7.15-0, 0.7.13-1, 0.7.13-0, 0.7.12-1, 0.7.12-0, 0.7.8-3, 0.7.8-2, 0.7.8-1, 0.7.8-0, 0.7.4-1, 0.7.4-0, 0.7.3a-4, 0.7.3a-3, 0.7.3a-2, 0.7.3a-1, 0.7.3a-0, 0.6.2-2, 0.6.2-1, 0.6.2-0, 0.5.9-2, 0.5.9-1, 0.5.9-0

Depends:

• libgcc-ng >=7.3.0
• perl
• zlib >=1.2.11,<1.3.0a0

Required By:

• pathogen-profiler
• daisysuite
• secapr
• virmet
• pyseer
• bwameth
• chorus2
• gottcha
• itero
• nullarbor
• shovill
• metawrap
• nanoraw
• stringmlst
• phenix
• fermikit
• ericscript
• rnftools
• relocate2
• xyalign
• riboseed
• wg-blimp
• bamm
• pb-assembly
• breakseq2
• savage
• srnapipe
• spectrassembler
• athena_meta
• discosnp
• mtbseq
• fusioncatcher
• phyluce
• scanindel
• motus
• ddocent
• novobreak
• batvi
• targqc
• sequana
• snippy
• circlator
• pirs
• hla-la
• phame
• wgfast
• nanopolish
• minvar
• abeona
• anvio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bwa

and update with:

conda update bwa

or use the docker container:

docker pull quay.io/biocontainers/bwa:<tag>

(see bwa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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