recipe bwa

The BWA read mapper.

Homepage

https://github.com/lh3/bwa

License

GPL3

Recipe

/bwa/meta.yaml

Links

biotools: bwa

package bwa

Versions

0.7.17-5, 0.7.17-4, 0.7.17-3, 0.7.17-2, 0.7.17-1, 0.7.17-0, 0.7.16-0, 0.7.15-1, 0.7.15-0, 0.7.13-1, 0.7.13-0, 0.7.12-1, 0.7.12-0, 0.7.8-3, 0.7.8-2, 0.7.8-1, 0.7.8-0, 0.7.4-1, 0.7.4-0, 0.7.3a-4, 0.7.3a-3, 0.7.3a-2, 0.7.3a-1, 0.7.3a-0, 0.6.2-2, 0.6.2-1, 0.6.2-0, 0.5.9-2, 0.5.9-1, 0.5.9-0

Depends

• libgcc-ng >=7.3.0

• perl

• zlib >=1.2.11,<1.3.0a0

Required By

• pyseer

• phame

• hla-la

• ismapper

• wgfast

• hint

• bwameth

• riboseed

• rnftools

• sequana

• mtsv

• snippy

• gottcha

• breakseq2

• metawrap

• secapr

• shovill

• xyalign

• anvio

• ipyrad

• nullarbor

• minvar

• relocate2

• virmet

• clever-toolkit

• fusioncatcher

• itero

• novobreak

• qtlseq

• pb-assembly

• daisysuite

• athena_meta

• batvi

• ericscript

• discosnp

• mutmap

• srnapipe

• pirs

• motus

• stringmlst

• fermikit

• spectrassembler

• bamm

• nanoraw

• abeona

• savage

• pathogen-profiler

• targqc

• phyluce

• wg-blimp

• nanopolish

• phenix

• scanindel

• circlator

• chorus2

• ddocent

• mtbseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bwa

and update with:

conda update bwa

or use the docker container:

docker pull quay.io/biocontainers/bwa:<tag>

(see bwa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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