recipe bwa

The BWA read mapper.

Homepage

https://github.com/lh3/bwa

License

GPL3

Recipe

/bwa/meta.yaml

Links

biotools: bwa

package bwa

Versions

0.7.17-7, 0.7.17-6, 0.7.17-5, 0.7.17-4, 0.7.17-3, 0.7.17-2, 0.7.17-1, 0.7.17-0, 0.7.16-0, 0.7.15-1, 0.7.15-0, 0.7.13-1, 0.7.13-0, 0.7.12-1, 0.7.12-0, 0.7.8-5, 0.7.8-4, 0.7.8-3, 0.7.8-2, 0.7.8-1, 0.7.8-0, 0.7.4-3, 0.7.4-2, 0.7.4-1, 0.7.4-0, 0.7.3a-4, 0.7.3a-3, 0.7.3a-2, 0.7.3a-1, 0.7.3a-0, 0.6.2-2, 0.6.2-1, 0.6.2-0, 0.5.9-2, 0.5.9-1, 0.5.9-0

Depends

• libgcc-ng >=7.3.0

• perl

• zlib >=1.2.11,<1.3.0a0

Required By

• scanindel

• vcfkit

• mutmap

• wgfast

• batvi

• bamm

• riboseed

• bwameth

• mtbseq

• ismapper

• biotradis

• chorus2

• virmet

• savage

• athena_meta

• secapr

• ericscript

• clever-toolkit

• mtsv

• haploconduct

• hiline

• artic

• nanoraw

• tb-profiler

• minvar

• qtlseq

• xyalign

• uvp

• tetyper

• stringmlst

• hitea

• targqc

• haphpipe

• phame

• metawrap

• vsnp

• rnftools

• chira

• pathogen-profiler

• nanopolish

• gottcha

• shovill

• coverm

• ipyrad

• abeona

• rucs

• panpasco

• treesapp

• circlator

• hint

• hla-la

• rgi

• anvio

• repdenovo

• rilseq

• gridss

• bwakit

• daisysuite

• discosnp

• novobreak

• pirs

• fusioncatcher

• itero

• minys

• ddocent

• fermikit

• snippy

• breakseq2

• wg-blimp

• pb-assembly

• relocate2

• rop

• phyluce

• srnapipe

• datma

• phenix

• motus

• seqsero2

• pyseer

• spectrassembler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bwa

and update with:

conda update bwa

or use the docker container:

docker pull quay.io/biocontainers/bwa:<tag>

(see bwa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bwa/README.html)