recipe c4counter

returns the number and types of human C4 regions in a fasta file

Homepage:

https://github.com/irunonayran/c4counter.git

License:

MIT / MIT

Recipe:

/c4counter/meta.yaml

package c4counter

versions:

0.0.2-0

depends biopython:

depends docopt:

depends minimap2:

depends python:

>=3.7

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install c4counter

and update with::

   mamba update c4counter

To create a new environment, run:

mamba create --name myenvname c4counter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/c4counter:<tag>

(see `c4counter/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/c4counter/README.html)