recipe cactus

Cactus is a reference-free whole-genome multiple alignment program based upon notion of Cactus graphs

Homepage:

https://github.com/ComparativeGenomicsToolkit/cactus

License:

https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/LICENSE.txt

Recipe:

/cactus/meta.yaml

package cactus

Versions:

2019.03.01-1,  2019.03.01-0,  0.0.2019.03.01-5,  0.0.2019.03.01-4,  0.0.2019.03.01-3,  0.0.2019.03.01-2

Depends:

• biopython

• cython

• decorator

• jobtree

• kyototycoon

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• networkx 1.11.*

• openssl 1.0.2.*

• psutil

• python 2.7.*

• sonlib

• subprocess32

• toil 3.14.0.*

• ucsc-bedsort

• ucsc-bedtobigbed

• ucsc-bigbedtobed

• ucsc-fatotwobit

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cactus

and update with:

conda update cactus

or use the docker container:

docker pull quay.io/biocontainers/cactus:<tag>

(see cactus/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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