recipe cagee

Analyzes changes in gene expression in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences

Homepage:

https://github.com/hahnlab/CAGEE

License:

ECL

Recipe:

/cagee/meta.yaml

package cagee

(downloads) docker_cagee

versions:

1.2-1,  1.2-0,  1.1.1-0,  1.0-2,  1.0-1,  1.0-0

depends _openmp_mutex:

>=4.5

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends mkl:

>=2020.4

depends zstd:

>=1.5.6,<1.6.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cagee

and update with::

   mamba update cagee

To create a new environment, run:

mamba create --name myenvname cagee

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cagee:<tag>

(see `cagee/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cagee/README.html)