recipe calisp

Estimate isotopic composition of peptides from proteomics mass spectrometry data

Homepage:

https://github.com/kinestetika/Calisp

License:

MIT

Recipe:

/calisp/meta.yaml

package calisp

versions:

3.0.13-0,  3.0.12-0,  3.0.11-0,  3.0.10-0

depends numpy:

depends pandas:

depends pyarrow:

depends pymzml:

depends python:

depends scipy:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install calisp

and update with::

   mamba update calisp

To create a new environment, run:

mamba create --name myenvname calisp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/calisp:<tag>

(see `calisp/tags`_ for valid values for ``<tag>``)

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