recipe canu

Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.

Homepage:

http://canu.readthedocs.org/

Developer docs:

https://github.com/marbl/canu

License:

GPL / GPLv2 and others

Recipe:

/canu/meta.yaml

Links:

usegalaxy-eu: canu

package canu

Versions:

2.2-0,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.0-0,  1.9-1,  1.9-0,  1.8-2,  1.8-1, 

2.2-0,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.0-0,  1.9-1,  1.9-0,  1.8-2,  1.8-1,  1.8-0,  1.7.1-0,  1.7-0,  1.6-1,  1.5-1,  1.5-0,  1.4-2,  1.4-1,  1.4-0,  1.3-0,  1.1-0

Depends:

• gnuplot >=5.2

• libgcc-ng >=9.4.0

• libstdcxx-ng >=9.4.0

• minimap2

• openjdk >=8

• perl

• perl-filesys-df

Required By:

• circlator

• bttoxin_digger

• pgcgap

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install canu

and update with:

conda update canu

or use the docker container:

docker pull quay.io/biocontainers/canu:<tag>

(see canu/tags for valid values for <tag>)

Download stats

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