recipe capc-map

Analysis software for Capture-C data

Homepage:

https://capc-map.readthedocs.io/

License:

GNU General Public License v3.0

Recipe:

/capc-map/meta.yaml

package capc-map

versions:

1.1.3-6,  1.1.3-5,  1.1.3-4,  1.1.3-3,  1.1.3-2,  1.1.3-1,  1.1.3-0,  1.1.2-0

depends biopython:

>=1.70

depends bowtie:

>=1.1.1

depends cutadapt:

>=1.11

depends libgcc-ng:

>=10.3.0

depends libstdcxx-ng:

>=10.3.0

depends numpy:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends samtools:

>=1.3.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install capc-map

and update with::

   mamba update capc-map

To create a new environment, run:

mamba create --name myenvname capc-map

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/capc-map:<tag>

(see `capc-map/tags`_ for valid values for ``<tag>``)

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Link to this page

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