recipe capcruncher

An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data

Homepage:

https://github.com/sims-lab/CapCruncher.git

License:

GPL-3.0

Recipe:

/capcruncher/meta.yaml

package capcruncher

Versions:

0.2.3-0,  0.2.2-0,  0.1.1a1-0,  0.1.0a2-0

Depends:

• bedtools

• bowtie2 >=2.4.4

• cgatcore

• click

• cooler

• cytoolz <0.11

• dask

• fastqc

• flash

• iced

• joblib

• more-itertools

• multiqc

• natsort

• pandas

• plotly

• pyarrow

• pybedtools

• pysam

• python >=3.9

• python-xxhash

• samtools

• seaborn

• tqdm

• trackhub

• trim-galore

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-fetchchromsizes

• ujson

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install capcruncher

and update with:

conda update capcruncher

or use the docker container:

docker pull quay.io/biocontainers/capcruncher:<tag>

(see capcruncher/tags for valid values for <tag>)

Download stats

Link to this page

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