recipe carna

Constraint-based Alignment of RNA Ensembles

Homepage:

https://www.bioinf.uni-leipzig.de/~will/Software/CARNA/

License:

GPL

Recipe:

/carna/meta.yaml

Links:

biotools: carna

package carna

versions:

1.3.3-2,  1.3.3-1,  1.3.2-2,  1.3.2-1,  1.3.2-0,  1.3.1-5,  1.3.1-4,  1.3.1-3,  1.3.1-2, 

1.3.3-2,  1.3.3-1,  1.3.2-2,  1.3.2-1,  1.3.2-0,  1.3.1-5,  1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1

depends gecode:

5.0.0.*

depends libgcc-ng:

>=4.9

depends locarna:

1.9.1.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install carna

and update with::

   mamba update carna

To create a new environment, run:

mamba create --name myenvname carna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/carna:<tag>

(see `carna/tags`_ for valid values for ``<tag>``)

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