recipe cassiopee

scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions

Homepage:

https://github.com/osallou/cassiopee-c

License:

GPL-3+

Recipe:

/cassiopee/meta.yaml

package cassiopee

Versions:

1.0.9-6,  1.0.9-5,  1.0.9-4,  1.0.9-3,  1.0.9-2,  1.0.9-1,  1.0.9-0,  1.0.5-2,  1.0.5-1, 

1.0.9-6,  1.0.9-5,  1.0.9-4,  1.0.9-3,  1.0.9-2,  1.0.9-1,  1.0.9-0,  1.0.5-2,  1.0.5-1,  1.0.5-0

Depends:

• boost >=1.78.0,<1.78.1.0a0

• bzip2 >=1.0.8,<2.0a0

• glog >=0.6.0,<0.7.0a0

• icu >=70.1,<71.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cassiopee

and update with:

conda update cassiopee

or use the docker container:

docker pull quay.io/biocontainers/cassiopee:<tag>

(see cassiopee/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cassiopee/README.html)