cassiopee

downloads

scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions

Home https://github.com/osallou/cassiopee-c
Versions 1.0.5
License GPL-3+
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cassiopee

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cassiopee

and update with:

conda update cassiopee

docker

A Docker container is available at https://quay.io/repository/biocontainers/cassiopee.