recipe catch_chimera

CATCh is an ensemble classifier for chimera detection in 16S rRNA sequencing studies. The present bioconda recipe installs the 'CATCh_v1.run' binary, as suggested on authors website.

Homepage:

https://science.sckcen.be/en/Institutes/EHS/MCB/MIC/Bioinformatics/CATCh

License:

GPL3

Recipe:

/catch_chimera/meta.yaml

package catch_chimera

(downloads) docker_catch_chimera

versions:

1.0-1,  1.0-0

depends bioconductor-decipher:

depends perl:

>=5.32.1,<6.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install catch_chimera

and update with::

   mamba update catch_chimera

To create a new environment, run:

mamba create --name myenvname catch_chimera

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/catch_chimera:<tag>

(see `catch_chimera/tags`_ for valid values for ``<tag>``)

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