recipe ccne

Carbapenemase-encoding gene copy number estimator

Homepage:

https://github.com/biojiang/ccne

License:

GPL / GPL-3.0

Recipe:

/ccne/meta.yaml

package ccne

Versions:

1.1.2-0,  1.1.1-0,  1.1.0-0

Depends:

• bedtools >=2.29

• blast >=2.7

• bwa >=0.7

• deeptools >=3.3

• htstream >=1.3

• perl

• perl-math-cdf

• samtools >=1.9

• ucsc-fatotwobit

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ccne

and update with:

conda update ccne

or use the docker container:

docker pull quay.io/biocontainers/ccne:<tag>

(see ccne/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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