recipe ccsmeth

Detecting DNA methylation from PacBio CCS read

Homepage:

https://github.com/PengNi/ccsmeth

License:

BSD / BSD-3-Clause-Clear license

Recipe:

/ccsmeth/meta.yaml

package ccsmeth

Versions:

0.3.4-0,  0.3.2-0,  0.3.1-0

Depends:

• bedtools 2.30.0.*

• numpy >=1.20.0

• pbccs >=6.4.0

• pbmm2 >=1.9.0

• pybedtools >=0.8.1

• pysam >=0.19.0

• pytabix >=0.1

• python >=3.8

• pytorch >=1.2.0,<=1.11.0

• samtools >=1.12

• scikit-learn >=1.0.2

• setuptools

• statsmodels >=0.13.2

• tqdm >=4.64.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ccsmeth

and update with:

conda update ccsmeth

or use the docker container:

docker pull quay.io/biocontainers/ccsmeth:<tag>

(see ccsmeth/tags for valid values for <tag>)

Download stats

Link to this page

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