recipe cellprofiler-core

Dependency for CellProfiler v4.

Homepage:

https://github.com/CellProfiler/core

Documentation:

https://github.com/CellProfiler/CellProfiler/wiki

License:

BSD / BSD-3-Clause

Recipe:

/cellprofiler-core/meta.yaml

package cellprofiler-core

versions:

4.2.8-0,  4.2.7-0,  4.2.6-0,  4.2.5-0,  4.2.4-0,  4.2.2-0,  4.2.1-0,  4.2.0-0,  4.1.3-1, 

4.2.8-0,  4.2.7-0,  4.2.6-0,  4.2.5-0,  4.2.4-0,  4.2.2-0,  4.2.1-0,  4.2.0-0,  4.1.3-1,  4.1.3-0,  4.0.7-0,  4.0.6-0

depends boto3:

>=1.12.28

depends centrosome:

>=1.2.3,<1.3

depends docutils:

0.15.2

depends h5py:

>=3.6.0,<3.7.dev0

depends matplotlib-base:

>=3.1.3

depends numpy:

>=1.18.2

depends prokaryote:

2.4.4

depends psutil:

>=5.7.0

depends python:

>=3.8

depends python-bioformats:

4.0.7

depends python-javabridge:

4.0.3

depends pyzmq:

>=22.3,<23.dev0

depends scikit-image:

0.18.3

depends scipy:

>=1.4.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cellprofiler-core

and update with::

   mamba update cellprofiler-core

To create a new environment, run:

mamba create --name myenvname cellprofiler-core

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cellprofiler-core:<tag>

(see `cellprofiler-core/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cellprofiler-core/README.html)