recipe cenote-taker3

Cenote-Taker 3: Discover and annotate the virome

Homepage:

https://github.com/mtisza1/Cenote-Taker3

Documentation:

https://github.com/mtisza1/Cenote-Taker3/blob/v3.3.2/README.md

License:

MIT / MIT

Recipe:

/cenote-taker3/meta.yaml

package cenote-taker3

versions:

3.3.2-0,  3.3.1-0,  3.3.0-0,  3.2.1-0,  3.2.0-0

depends bedtools:

depends biopython:

depends coreutils:

depends findutils:

depends grep:

depends hhsuite:

depends minimap2:

depends mmseqs2:

depends numpy:

depends pandas:

depends phanotate:

depends prodigal:

depends pyarrow:

depends pyhmmer:

depends pyrodigal-gv:

>=0.3.1

depends python:

>=3.6

depends samtools:

depends sed:

depends seqkit:

depends tbl2asn-forever:

depends trnascan-se:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cenote-taker3

and update with::

   mamba update cenote-taker3

To create a new environment, run:

mamba create --name myenvname cenote-taker3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cenote-taker3:<tag>

(see `cenote-taker3/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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