Package Recipe 'cesm'

recipe cesm

The Community Earth System Model (CESM) is a coupled climate model for simulating Earth’s climate system

Homepage:: https://github.com/ESCOMP/cesm
Documentation:: http://www.cesm.ucar.edu/
License:: BSD / BSD 3-Clause
Recipe:: /cesm/meta.yaml

"CESM (Community Earth System Model) is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and future climate states. When creating a case, use `espresso` for the target machine. In addition, the following environment variables need to be defined before creating the cesm case: ``` export NETCDF_DIR=$(nc-config --prefix) export CIME_MODEL=cesm export CESM_DATA_ROOT=$HOME export CESM_WORK_ROOT=$HOME mkdir -p $CESM_DATA_ROOT/inputdata ``` "

package cesm¶

Versions:

2.1.3-6, 2.1.3-5, 2.1.3-4, 2.1.3-3, 2.1.3-2, 2.1.3-1, 2.1.3-0, 2.1.1-1, 2.1.1-0,

2.1.3-6, 2.1.3-5, 2.1.3-4, 2.1.3-3, 2.1.3-2, 2.1.3-1, 2.1.3-0, 2.1.1-1, 2.1.1-0, 2.1.0-0

Depends:

on binutils
on cmake
on gcc_linux-64 9.*
on gfortran_linux-64 9.*
on libgcc-ng >=9.4.0
on libgfortran-ng
on libgfortran5 >=9.4.0
on libiconv >=1.16,<1.17.0a0
on libxml2 >=2.9.12,<2.10.0a0
on make
on mkl
on mpich >=3.4.3,<4.0a0
on netcdf-fortran * *mpich*
on perl >=5.32.1,<5.33.0a0 *_perl5
on perl-xml-libxml
on python >=3.6,<3.7.0a0
on python_abi 3.6.* *_cp36m
on subversion
on tcsh
on wget

Additional platforms:

Installation¶

You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).

Pixi¶

With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:

pixi global install cesm

to add into an existing workspace instead, run:

pixi add cesm

In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:

pixi workspace channel add conda-forge
pixi workspace channel add bioconda

Conda¶

With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:

conda install cesm

Alternatively, to install into a new environment, run:

conda create -n envname cesm

with envname being the name of the desired environment.

Container¶

Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:

docker pull quay.io/biocontainers/cesm:<tag>

(see cesm/tags for valid values for <tag>).

Integrated deployment¶

Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cesm/README.html)