recipe cgat-apps

Computational Genomics Analysis Toolkit

Homepage

https://www.cgat.org/downloads/public/cgat/documentation

License

MIT

Recipe

/cgat-apps/meta.yaml

package cgat-apps

Versions

0.6.0-2,  0.6.0-1,  0.6.0-0,  0.5.6-0,  0.5.5-0,  0.5.4-0,  0.5.3-0

Depends

• alignlib-lite

• bedtools

• biopython

• cgatcore >=0.6.5

• coreutils

• future

• grep

• libcxx >=9.0.1

• libpng >=1.6.37,<1.7.0a0

• matplotlib-base

• numpy >=1.14.6,<2.0a0

• pandas

• pybedtools

• pybigwig

• pysam <=0.15.2

• python >=3.6,<3.7.0a0

• python-lzo

• python_abi 3.6.* *_cp36m

• pyyaml

• quicksect

• scipy

• six

• sortedcontainers

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-wigtobigwig

• zlib >=1.2.11,<1.3.0a0

Required By

• trnanalysis

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cgat-apps

and update with:

conda update cgat-apps

or use the docker container:

docker pull quay.io/biocontainers/cgat-apps:<tag>

(see cgat-apps/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cgat-apps/README.html)