-
recipe
cgat-apps¶ Computational Genomics Analysis Toolkit
- Homepage
- License
MIT
- Recipe
-
package
cgat-apps¶ 
- Versions
0.5.5-0, 0.5.4-0, 0.5.3-0
- Depends alignlib-lite
- Depends bedtools
- Depends biopython
- Depends cgatcore
- Depends coreutils
- Depends future
- Depends grep
- Depends libgcc-ng
>=7.3.0
- Depends libpng
>=1.6.35,<1.7.0a0
- Depends libstdcxx-ng
>=7.3.0
- Depends matplotlib
- Depends numpy
>=1.9.3,<2.0a0
- Depends pandas
- Depends pybedtools
- Depends pybigwig
- Depends pysam
>=0.15.2,<0.15.3.0a0
- Depends python
>=3.6,<3.7.0a0
- Depends python-lzo
- Depends pyyaml
- Depends quicksect
- Depends scipy
- Depends six
- Depends sortedcontainers
- Depends ucsc-bedgraphtobigwig
- Depends ucsc-bedtobigbed
- Depends ucsc-wigtobigwig
- Depends zlib
>=1.2.11,<1.3.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install cgat-apps
and update with:
conda update cgat-apps
or use the docker container:
docker pull quay.io/biocontainers/cgat-apps:<tag>
(see cgat-apps/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/cgat-apps/README.html)