recipe cgat-apps

Computational Genomics Analysis Toolkit

Homepage:

https://cgat-apps.readthedocs.io/en/latest/

License:

MIT

Recipe:

/cgat-apps/meta.yaml

package cgat-apps

Versions:

0.6.5-3,  0.6.5-2,  0.6.5-1,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.0-2,  0.6.0-1,  0.6.0-0, 

0.6.5-3,  0.6.5-2,  0.6.5-1,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.0-2,  0.6.0-1,  0.6.0-0,  0.5.6-0,  0.5.5-0,  0.5.4-0,  0.5.3-0

Depends:

• alignlib-lite

• bedtools

• biopython

• cgatcore >=0.6.5

• coreutils

• future

• grep

• htslib >=1.16,<1.17.0a0

• jinja2

• libcxx >=14.0.4

• matplotlib-base

• numpy >=1.21.6,<2.0a0

• pandas

• pybedtools

• pybigwig

• pysam >=0.17.0

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• pyyaml

• quicksect

• scikit-learn

• scipy

• six

• sortedcontainers

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-wigtobigwig

• zlib >=1.2.12,<1.3.0a0

Required By:

• trnanalysis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cgat-apps

and update with:

conda update cgat-apps

or use the docker container:

docker pull quay.io/biocontainers/cgat-apps:<tag>

(see cgat-apps/tags for valid values for <tag>)

Download stats

Link to this page

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