recipe cgat-apps

Computational Genomics Analysis Toolkit

Homepage

https://www.cgat.org/downloads/public/cgat/documentation

License

MIT

Recipe

/cgat-apps/meta.yaml

package cgat-apps

(downloads) docker_cgat-apps

Versions

0.5.5-0, 0.5.4-0, 0.5.3-0

Depends alignlib-lite

Depends bedtools

Depends biopython

Depends cgatcore

Depends coreutils

Depends future

Depends grep

Depends libgcc-ng

>=7.3.0

Depends libpng

>=1.6.35,<1.7.0a0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

Depends numpy

>=1.9.3,<2.0a0

Depends pandas

Depends pybedtools

Depends pybigwig

Depends pysam

>=0.15.2,<0.15.3.0a0

Depends python

>=3.6,<3.7.0a0

Depends python-lzo

Depends pyyaml

Depends quicksect

Depends scipy

Depends six

Depends sortedcontainers

Depends ucsc-bedgraphtobigwig

Depends ucsc-bedtobigbed

Depends ucsc-wigtobigwig

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cgat-apps

and update with:

conda update cgat-apps

or use the docker container:

docker pull quay.io/biocontainers/cgat-apps:<tag>

(see cgat-apps/tags for valid values for <tag>)