recipe cgat-scripts

Computational Genomics Analysis Toolkit

Homepage:

https://www.cgat.org/downloads/public/cgat/documentation

License:

BSD

Recipe:

/cgat-scripts/meta.yaml

package cgat-scripts

Versions:

0.3.2-2,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.7-0,  0.2.6-0

Depends:

• alignlib-lite 0.3.*

• bedtools 2.26.*

• biopython 1.70.*

• coreutils 8.25.*

• cython 0.27.*

• future 0.16.*

• grep 2.14.*

• libgcc-ng >=4.9

• libpng >=1.6.34,<1.7.0a0

• matplotlib 2.1.*

• numpy 1.12.*

• pandas 0.21.*

• pybedtools 0.7.*

• pybigwig 0.3.*

• pysam 0.13.*

• python >=3.5,<3.6.0a0

• python-lzo 1.11.*

• pyyaml 3.12.*

• rpy2 2.8.*

• scipy 0.19.*

• six 1.11.*

• ucsc-bedgraphtobigwig 357.*

• ucsc-bedtobigbed 357.*

• ucsc-wigtobigwig 357.*

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cgat-scripts

and update with:

conda update cgat-scripts

or use the docker container:

docker pull quay.io/biocontainers/cgat-scripts:<tag>

(see cgat-scripts/tags for valid values for <tag>)

Download stats

Link to this page

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