recipe cgat-scripts

Computational Genomics Analysis Toolkit

Homepage

https://www.cgat.org/downloads/public/cgat/documentation

License

BSD

Recipe

/cgat-scripts/meta.yaml

package cgat-scripts

(downloads) docker_cgat-scripts

Versions

0.3.2-2, 0.3.2-0, 0.3.1-1, 0.3.1-0, 0.3.0-0, 0.2.7-0, 0.2.6-0

Depends alignlib-lite

0.3.*

Depends bedtools

2.26.*

Depends biopython

1.70.*

Depends coreutils

8.25.*

Depends cython

0.27.*

Depends future

0.16.*

Depends grep

2.14.*

Depends libgcc-ng

>=4.9

Depends libpng

>=1.6.34,<1.7.0a0

Depends matplotlib

2.1.*

Depends numpy

1.12.*

Depends pandas

0.21.*

Depends pybedtools

0.7.*

Depends pybigwig

0.3.*

Depends pysam

0.13.*

Depends python

>=3.5,<3.6.0a0

Depends python-lzo

1.11.*

Depends pyyaml

3.12.*

Depends rpy2

2.8.*

Depends scipy

0.19.*

Depends six

1.11.*

Depends ucsc-bedgraphtobigwig

357.*

Depends ucsc-bedtobigbed

357.*

Depends ucsc-wigtobigwig

357.*

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cgat-scripts

and update with:

conda update cgat-scripts

or use the docker container:

docker pull quay.io/biocontainers/cgat-scripts:<tag>

(see cgat-scripts/tags for valid values for <tag>)