- recipe cgatcore
CGAT : the Computational Genomics Analysis Toolkit
- Homepage:
- License:
MIT / MIT
- Recipe:
- package cgatcore¶
- versions:
0.6.15-0,0.6.14-0,0.6.11-0,0.6.10-0,0.6.9-0,0.6.7-0,0.6.5-1,0.6.5-0,0.6.4-0,0.6.15-0,0.6.14-0,0.6.11-0,0.6.10-0,0.6.9-0,0.6.7-0,0.6.5-1,0.6.5-0,0.6.4-0,0.6.3-1,0.6.3-0,0.6.1-1,0.6.1-0,0.5.15-1,0.5.15-0,0.5.14-0,0.5.13-0,0.5.12-1,0.5.11-0,0.5.10-0,0.5.6-0,0.5.4-0,0.5.2-0,0.5.1-0- depends apsw:
- depends boto3:
- depends coreutils:
- depends drmaa:
- depends ftputil:
- depends gevent:
- depends google-cloud-sdk:
- depends google-cloud-storage:
- depends nomkl:
- depends pandas:
- depends pysftp:
- depends python:
>=3- depends pyyaml:
>=5.1- depends ruffus:
- depends six:
- depends sqlalchemy:
- depends time:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install cgatcore and update with:: mamba update cgatcore
To create a new environment, run:
mamba create --name myenvname cgatcore
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/cgatcore:<tag> (see `cgatcore/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/cgatcore/README.html)
