recipe cgecore

Center for Genomic Epidemiology Core Module

Homepage:

https://bitbucket.org/genomicepidemiology/cge_core_module

License:

Apache / Apache-2.0

Recipe:

/cgecore/meta.yaml

package cgecore

versions:

2.0.0-0,  1.5.6-0,  1.5.5-1,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.1-0,  1.5.0-0

depends biopython:

>=1.81

depends gitpython:

>=3.1.40

depends numpy:

>=1.26.2

depends pandas:

>=2.1.4

depends python:

>=3.10

depends python-dateutil:

>=2.8.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cgecore

and update with::

   mamba update cgecore

To create a new environment, run:

mamba create --name myenvname cgecore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cgecore:<tag>

(see `cgecore/tags`_ for valid values for ``<tag>``)

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Link to this page

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