recipe cgelib

This package will in time replace the cgecore package. The package contains classes and functions intended to be utilized across the CGE tools.

Homepage:

https://genomicepidemiology.org/

Developer docs:

https://bitbucket.org/genomicepidemiology/cgelib

License:

APACHE / Apache-2.0

Recipe:

/cgelib/meta.yaml

package cgelib

(downloads) docker_cgelib

versions:

0.7.5-0,  0.7.4-0

depends gitpython:

depends python:

>=3.6

depends python-dateutil:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cgelib

and update with::

   mamba update cgelib

To create a new environment, run:

mamba create --name myenvname cgelib

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cgelib:<tag>

(see `cgelib/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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