recipe cgpbigwig

BigWig manpulation tools using libBigWig and htslib

Homepage:

https://github.com/cancerit/cgpBigWig

License:

GPL3 / GPL-3.0-only

Recipe:

/cgpbigwig/meta.yaml

package cgpbigwig

(downloads) docker_cgpbigwig

versions:
1.7.0-0,  1.6.0-9,  1.6.0-8,  1.6.0-7,  1.6.0-6,  1.6.0-5,  1.6.0-4,  1.6.0-3,  1.6.0-2, 

1.7.0-0,  1.6.0-9,  1.6.0-8,  1.6.0-7,  1.6.0-6,  1.6.0-5,  1.6.0-4,  1.6.0-3,  1.6.0-2,  1.6.0-1,  1.6.0-0,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.4-0,  1.0.3-0,  1.0.2-0

depends bzip2:

>=1.0.8,<2.0a0

depends gmp:

>=6.3.0,<7.0a0

depends gnutls:

>=3.7.9,<3.8.0a0

depends htslib:

>=1.20,<1.22.0a0

depends libbigwig:

>=0.4.7,<0.5.0a0

depends libgcc-ng:

>=12

depends libtasn1:

>=4.19.0,<5.0a0

depends libzlib:

>=1.2.13,<2.0a0

depends nettle:

>=3.9.1,<3.10.0a0

depends p11-kit:

>=0.24.1,<0.25.0a0

depends xz:

>=5.2.6,<6.0a0

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cgpbigwig

and update with::

   mamba update cgpbigwig

To create a new environment, run:

mamba create --name myenvname cgpbigwig

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cgpbigwig:<tag>

(see `cgpbigwig/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cgpbigwig/README.html)