recipe cgview

CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web.

Homepage:

http://wishart.biology.ualberta.ca/cgview/

License:

GNU General Public License, Version 2.0

Recipe:

/cgview/meta.yaml

package cgview

(downloads) docker_cgview

versions:

1.0-6,  1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1

depends openjdk:

>=6

depends perl:

depends perl-bioperl:

>=1.7.2

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cgview

and update with::

   mamba update cgview

To create a new environment, run:

mamba create --name myenvname cgview

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cgview:<tag>

(see `cgview/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cgview/README.html)