recipe chado-tools

Tools to access CHADO databases

Homepage:

https://github.com/sanger-pathogens/chado-tools

License:

GPL / GPL-3.0

Recipe:

/chado-tools/meta.yaml

package chado-tools

versions:

0.2.15-0,  0.2.14-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.8-0,  0.2.5-0,  0.0.5-0, 

0.2.15-0,  0.2.14-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.8-0,  0.2.5-0,  0.0.5-0,  0.0.4-0,  0.0.3-0

depends biopython:

depends gffutils:

depends postgresql:

>=9.6

depends pronto:

>=0.11.0

depends psycopg2:

depends python:

3.6.*

depends pyyaml:

depends sqlalchemy:

depends sqlalchemy-utils:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install chado-tools

and update with::

   mamba update chado-tools

To create a new environment, run:

mamba create --name myenvname chado-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/chado-tools:<tag>

(see `chado-tools/tags`_ for valid values for ``<tag>``)

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