recipe chain2paf

convert CHAIN format to PAF format

Homepage:

https://github.com/AndreaGuarracino/chain2paf

License:

MIT / MIT

Recipe:

/chain2paf/meta.yaml

package chain2paf

versions:

0.1.1-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install chain2paf

and update with::

   mamba update chain2paf

To create a new environment, run:

mamba create --name myenvname chain2paf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/chain2paf:<tag>

(see `chain2paf/tags`_ for valid values for ``<tag>``)

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