recipe changeo

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.

Homepage

http://changeo.readthedocs.io

License

CC / Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)

Recipe

/changeo/meta.yaml

package changeo

(downloads) docker_changeo

Versions

0.4.5-0, 0.4.4-0

Depends airr

>=1.2.1

Depends biopython

>=1.65

Depends numpy

>=1.8

Depends pandas

>=0.15

Depends presto

>=0.5.10

Depends python

>=3.4

Depends pyyaml

>=3.12

Depends scipy

>=0.14

Depends setuptools

>=2.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install changeo

and update with:

conda update changeo

or use the docker container:

docker pull quay.io/biocontainers/changeo:<tag>

(see changeo/tags for valid values for <tag>)