recipe changeo

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.

Homepage:

https://github.com/immcantation/changeo

Documentation:

https://changeo.readthedocs.io

License:

CC / Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)

Recipe:

/changeo/meta.yaml

Links:

doi: 10.1093/bioinformatics/btv359

package changeo

versions:

1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.4.6-0,  0.4.5-0, 

1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.4.6-0,  0.4.5-0,  0.4.4-0

depends airr:

>=1.3.1

depends biopython:

>=1.81

depends numpy:

>=1.8

depends packaging:

>=23.2

depends pandas:

>=0.24

depends presto:

>=0.7.0

depends python:

>=3.4

depends pyyaml:

>=5.1

depends scipy:

>=0.14

depends setuptools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install changeo

and update with::

   mamba update changeo

To create a new environment, run:

mamba create --name myenvname changeo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/changeo:<tag>

(see `changeo/tags`_ for valid values for ``<tag>``)

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