recipe changeo

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.

Homepage:

http://changeo.readthedocs.io

License:

CC / Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)

Recipe:

/changeo/meta.yaml

package changeo

Versions:

1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.4.6-0,  0.4.5-0,  0.4.4-0

Depends:

• airr >=1.2.1

• biopython >=1.65,<1.78

• numpy >=1.8

• pandas >=0.15

• presto >=0.5.10

• python >=3.4

• pyyaml >=3.12

• scipy >=0.14

Required By:

• igphyml

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install changeo

and update with:

conda update changeo

or use the docker container:

docker pull quay.io/biocontainers/changeo:<tag>

(see changeo/tags for valid values for <tag>)

Download stats

Link to this page

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