recipe changeo

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.



CC / Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)



package changeo

(downloads) docker_changeo



depends airr:


depends biopython:


depends numpy:


depends pandas:


depends presto:


depends python:


depends pyyaml:


depends scipy:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install changeo

and update with::

   mamba update changeo

To create a new environment, run:

mamba create --name myenvname changeo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `changeo/tags`_ for valid values for ``<tag>``)

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