recipe checkatlas

One liner tool to check the quality of your single-cell atlases.

Homepage:

https://checkatlas.readthedocs.io/

Developer docs:

https://github.com/becavin-lab/checkatlas

License:

BSD / BSD 3-Clause

Recipe:

/checkatlas/meta.yaml

package checkatlas

versions:

0.4.17-0,  0.4.13-0,  0.4.7-0,  0.4.2-0

depends llvmlite:

>=0.39.1,<0.40.0

depends numba:

>=0.56.4,<0.57.0

depends numpy:

>=1.23.5,<2.0.0

depends python:

>=3.10

depends rpy2:

3.5.10

depends scanpy:

>=1.9.1,<2.0.0

depends scikit-learn:

>=1.2.1,<2.0.0

depends types-pyyaml:

>=6.0.12.6,<7.0.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install checkatlas

and update with::

   mamba update checkatlas

To create a new environment, run:

mamba create --name myenvname checkatlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/checkatlas:<tag>

(see `checkatlas/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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