recipe checkm-genome

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Homepage:

https://ecogenomics.github.io/CheckM/

License:

GPL3

Recipe:

/checkm-genome/meta.yaml

package checkm-genome

Versions:

1.2.2-1,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.11-0,  1.1.10-0,  1.1.9-0,  1.1.8-0,  1.1.3-1, 

1.2.2-1,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.11-0,  1.1.10-0,  1.1.9-0,  1.1.8-0,  1.1.3-1,  1.1.3-0,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.18-0,  1.0.17-0,  1.0.16-0,  1.0.13-1,  1.0.13-0,  1.0.12-0,  1.0.11-1,  1.0.11-0,  1.0.7-0,  1.0.5-0

Depends:

• dendropy >=4.4.0

• hmmer >=3.1b1

• matplotlib-base >=2.1.0

• numpy >=1.13.1

• pplacer 1.1.alpha19

• prodigal >=2.6.1

• pysam >=0.15.3

• python >=3.6

• scipy >=0.19.1

• wget

Required By:

• datma

• metabinner

• rfplasmid

• metawrap-mg

• binsanity

• milonga

• dfast_qc

• zga

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install checkm-genome

and update with:

conda update checkm-genome

or use the docker container:

docker pull quay.io/biocontainers/checkm-genome:<tag>

(see checkm-genome/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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