recipe checkm2

CheckM2 - Predicting the quality of metagenome-recovered bins

Homepage:

https://github.com/chklovski/CheckM2

License:

GPL-3.0

Recipe:

/checkm2/meta.yaml

package checkm2

Versions:

1.0.1-0

Depends:

• diamond 2.0.4.*

• h5py 2.10.0.*

• lightgbm 3.2.1.*

• numpy 1.19.2.*

• packaging

• pandas <=1.4.0

• prodigal >=2.6.3

• python >=3.6,<3.9

• requests

• scikit-learn 0.23.2.*

• scipy

• setuptools

• tensorflow >=2.1.0,<2.6.0

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install checkm2

and update with:

conda update checkm2

or use the docker container:

docker pull quay.io/biocontainers/checkm2:<tag>

(see checkm2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/checkm2/README.html)