recipe checkv

Assess the quality of metagenome-assembled viral genomes.

Homepage:

https://bitbucket.org/berkeleylab/checkv

License:

BSD / Modified BSD

Recipe:

/checkv/meta.yaml

Links:

biotools: checkv, doi: 10.1038/s41587-020-00774-7

package checkv

Versions:

1.0.1-0,  1.0.0-0,  0.9.0-0,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.0-1,  0.7.0-0,  0.6.0-1, 

1.0.1-0,  1.0.0-0,  0.9.0-0,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.0-1,  0.7.0-0,  0.6.0-1,  0.6.0-0,  0.5.1-1,  0.5.1-0,  0.4.0-1,  0.4.0-0,  0.3.0-0,  0.2.0-0,  0.1.0-0

Depends:

• biopython

• diamond

• hmmer

• importlib-metadata >=0.12

• kcounter

• numpy

• prodigal-gv

• psutil

• python >=3.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install checkv

and update with:

conda update checkv

or use the docker container:

docker pull quay.io/biocontainers/checkv:<tag>

(see checkv/tags for valid values for <tag>)

Download stats

Link to this page

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