recipe cherri

Accurate detection of functional RNA-RNA Interactions sites

Homepage:

https://github.com/BackofenLab/Cherri

License:

GPL3 / GPL-3.0-or-later

Recipe:

/cherri/meta.yaml

package cherri

versions:

0.8-0,  0.7-1,  0.7-0,  0.6-0

depends bedtools:

depends biofilm:

>=0.0.102

depends biopython:

depends eden-kernel:

depends intarna:

depends interlap:

depends networkx:

depends numpy:

depends pandas:

depends python:

depends python-wget:

depends scikit-learn:

depends ubergauss:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cherri

and update with::

   mamba update cherri

To create a new environment, run:

mamba create --name myenvname cherri

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cherri:<tag>

(see `cherri/tags`_ for valid values for ``<tag>``)

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